| | Expertise |
Thesaurus term: Bioinformatics data integration and network biology
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| Projects (6) |
Top | Institute | Publications | Projects |
- ENVironmental Research Infrastructures building Fair services Accessible for society, Innovation and Research, more
- European Marine Observation and Data Network- Biology IV, more
- European Marine Observation and Data Network- Biology V, more
- MARine COastal BiOdiversity Long-term Observations, more
- Open AIS: Leveraging vessel tracking data for insight, more
- Providing an open collaborative space for digital biology in Europe, more
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| Publications (19) |
Top | Institute | Publications | Projects |
| A1 Publications (2) [show] |
 Meyer, R.; Kleynhans, W.; Portier, M.; Beja, J.; Tyberghein, L. (2023). Dataset of ocean vessel traffic in the North Sea. Data in Brief 51: 109746. https://dx.doi.org/10.1016/j.dib.2023.109746, more- Exter, K.; Decruw, C.; Kotoulas, G.; Mavraki, D.; Obst, M.; Pavloudi, C.; Portier, M.; Tyberghein, L. (2021). FAIR data management for Genomics Observatories, in: Fichaut, M. et al. IMDIS 2021 International Conference on Marine Data and Information Systems 12-14 April, 2021 Online: Book of Abstracts. Bollettino di Geofisica Teorica ed Applicata: an International Journal of Earth Sciences, 62(Suppl. 1): pp. 269-270, more
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| Peer reviewed publications (6) [show] |
- Lodi, G.; Russo, A.; Goley, J.; Portier, M.; Exter, K. (2024). The European MAREGRAPH project: enhancing marine data interoperability through semantic knowledge graphs. Biodiversity Information Science and Standards 8. https://dx.doi.org/10.3897/biss.8.136697, more
- Decruw, C.; Vandepitte, L.; Perez Perez, R.; Marquez, L.; Portier, M.; Vanhoorne, B.; Tyberghein, L. (2022). An algorithmic approach to reducing taxonomic detail from actual datasets to their metadata representation to increase findabilty. Biodiversity Information Science and Standards 6: e94603. https://dx.doi.org/10.3897/biss.6.94603, more
- Portier, M.; Decruw, C.; Exter, K.; Meyer, R.; Tyberghein, L.; Van Maldeghem, L. (2022). Contemporary data management for biodiversity observation networks leading to linked open data publishing through distributed techniques applying RO-Crate and GitHub actions. Biodiversity Information Science and Standards 6: e94630. https://dx.doi.org/10.3897/biss.6.94630, more
- Soiland-Reyes, S.; Sefton, P.; Crosas, M.; Castro, L.J.; Coppens, F.; Fernández, J.M.; Garijo, D.; Grüning, B.; La Rosa, M.; Leo, S.; Ó Carragáin, E.; Portier, M.; Trisovic, A.; RO-Crate Community; Groth, P.; Goble, C. (2022). Packaging research artefacts with RO-Crate. Data Science 5(2): 97-138. https://dx.doi.org/10.3233/ds-210053, more
- Van Maldeghem, L.; Portier, M.; Vandepitte, L.; Lonneville, B.; Vanhoorne, B.; Tyberghein, L. (2022). Linked data publishing of the World Register of Marine Species (WoRMS) as a basis for uniformly linking-up resources to accepted taxon names. Biodiversity Information Science and Standards 6: e94903. https://dx.doi.org/10.3897/biss.6.94903, more
- Exter, K.; Decruw, C.; Portier, M.; Gerovasileiou, V.; Pavloudi, C.; Obst, M. (2020). Genomics Observatory use-case: the challenge to standardise image and sequence data to Darwin Core format. Biodiversity Information Science and Standards 4: e58938. https://dx.doi.org/10.3897/biss.4.58938, more
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| Book chapter [show] |
- Lonneville, B.; Delva, H.; Portier, M.; Van Maldeghem, L.; Schepers, L.; Bakeev, D.; Vanhoorne, B.; Tyberghein, L.; Colpaert, P. (2021). Publishing the Marine Regions Gazetteer as a Linked Data Event Stream, in: Algergawy, A. et al. S4BioDiv 2021: 3rd International Workshop on Semantics for Biodiversity, held at JOWO 2021: Episode VII The Bolzano Summer of Knowledge, September 11–18, 2021, Bolzano, Italy. CEUR Workshop Proceedings, 2969: pp. [1-12], more
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| Abstracts (5) [show] |
- Kokkinaki, A.; Thijssen, P.; Krijger, T.; Portier, M.; Moncoiffe, G.; Weerheim, P. (2024). Interoperable services as foundation for data access and processing, in: Simoncelli, S. et al. International Conference on Marine Data and Information Systems: Proceedings Volume, IMDIS 2024 Bergen (Norway) 27-29 May 2024. Miscellanea INGV, 80: pp. 86-87, more
- Portier, M.; Decruw, C.; Tyberghein, L.; Scott, L.; Lambert, A.; Provoost, P.; Fils, D.; Buttigieg, P.L.; Vanhoorne, B.; Claus, S.; Rojas, J.; Lodi, G.; Russo, A. (2024). Functional «Semantic Web» practice in the marine research domain, in: Simoncelli, S. et al. International Conference on Marine Data and Information Systems: Proceedings Volume, IMDIS 2024 Bergen (Norway) 27-29 May 2024. Miscellanea INGV, 80: pp. 46-47, more
- Portier, M.; Thijssen, P.; Kokkinaki, A.; Krijger, T.; Moncoiffe, G.; Weerheim, P.; Bodéré, E. (2024). Using data fragments as the foundation for interoperable data access, in: Simoncelli, S. et al. International Conference on Marine Data and Information Systems: Proceedings Volume, IMDIS 2024 Bergen (Norway) 27-29 May 2024. Miscellanea INGV, 80: pp. 48-49, more
- Goley, J.; Portier, M.; Exter, K.; Meyer, R.; Decruw, C.; Ulrichts, B. (2023). The Open Science initiative at VLIZ, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 1 March 2023, Bruges. VLIZ Special Publication, 90: pp. 61, more
- Huertas-Olivares, C.; Basset, A.; Exter, K.; Kotoulas, G.; Fiore, N.; Portier, M.; Meyer, R.; Schaap, D.; Santi, I.; Obst, M.; Vermeulen, A.; Thijssen, P.; Pade, N.; Gonzalez Aranda, J.M.; López, J.; Minadakis, N.; Vaira, L.; Pavloudi, C.; Arvanitidis, C. (2023). Accelerating the research on biodiversity and ecosystems: best practice on climate change vs non-indigenous invasive species (NIS), in: EGU General Assembly 2023. Vienna, Austria & Online, 23–28 April 2023. pp. EGU23-15298. https://dx.doi.org/10.5194/egusphere-egu23-15298, more
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| Reports (2) [show] |
- Chiusano, M.L.; Schlitzer, R.; Simoncelli, S.; Troupin, C.; Langella, G.; Terrible, F.; Pascal, N.; Boichu, M.; Grandin, R.; Racapé, V.; Schmechtig, C.; Sauzède, R.; Sizun, A.; Giorgetti, A.; Reyes, C.; Cox, C.J.; Exter, K.; Portier, M.; Ninidakis, S.; Santi, I.; Bosso, L.; Ambrosino, L.; Miralto, M. (2023). FAIR-EASE D5.1: Report on key requirement from use cases and pilots. UNINA: Naples. 91 pp., more
- Portier, M.; Troupin, C.; Weber, C.; Sarramia, D.; Smyth, D.; Bodéré, E.; Leclercq, F.; Moncoiffe, G.; Santi, I.; Goley, J.; Exter, K.; Thijsse, P.; Schlitzer, R.; Krijger, T.; Breton, V.; Simoncelli, S. (2023). FAIR-EASE D4.1: Landscaping exercise: the (meta)data, software, and cloud needs for the data lake. VLIZ: Ostend. 27 pp. https://dx.doi.org/10.5281/zenodo.7920623, more
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| Other publications (3) [show] |
- Arvanitidis, C.; Basset, A.; Carval, T.; Exter, K.; Fiore, N.; Giorgetti, A.; Gonzalez Aranda, J.M.; Hebden, M.; Kotoulas, G.; López Lérida, J.; Meyer, R.; Minadakis, N.; Obst, M.; Pade, N.; Pavloudi, C.; Portier, M.; Santi, I.; Schaap, D.; Thijssen, P.; Vaira, L.; Huertas-Olivares, C. (2023). Climate change impact on biodiversity and ecosystems in Europe: Assessing the impact of Non-Indigenous Invasive Species (NIS) in European ecosystems. ARPHA Preprints e106475: 1-8. https://dx.doi.org/10.3897/arphapreprints.e106475, more
- Soiland-Reyes, S.; Sefton, P.; Castro, L.J.; Coppens, F.; Garijo, D.; Leo, S.; Portier, M.; Groth, P. (2022). Creating lightweight FAIR Digital Objects with RO-Crate. Research Ideas and Outcomes 8: e93937. https://dx.doi.org/10.3897/rio.8.e93937, more
- Soiland-Reyes, S.; Castro, L.J.; Garijo, D.; Portier, M.; Goble, C.; Groth, P. (2022). Updating Linked Data practices for FAIR Digital Object principles. Research Ideas and Outcomes 8: e94501. https://dx.doi.org/10.3897/rio.8.e94501, more
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