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VIB-Ugent Center for Plant Systems Biology (VIB-PSB)
www.psb.ugent.be/index.php

Dutch name: VIB-Ugent Centrum voor Plantaardige systeembiologie
Parent institute: Flanders Institute for Biotechnology (VIB), more

MRG keywords (3) : Aquaculture; Microbiology; Molecular biology

Address:
Technologiepark 71
9052 Gent
Belgium

Tel.: +32-(0)9-331 38 00
E-mail:

Persons | Publications | Projects

Type: Scientific
Level: Department

Persons formerly associated with this organization (27)

Abstract:

The cornerstone of the center for Plant Systems Biology (VIB-PSB) is curiosity-driven research on basic cellular mechanisms. Much of this research is performed on Arabidopsis as well as other plants including maize, poplar, tomato, wheat, Marchantia, duckweed, canola, soybean and plants producing high value specialised metabolites. VIB-PSB has identified five scientific focus areas:

plant metabolism (morphological and biochemical features of plants for carbon fixation, environment adaptation and human consumption and utilisation), growth and development;

interaction of plants with the environment (interaction of different abiotic stress factors, e.g. droughts and heat, water deficiciency, closing the lab-field gap, intercropping);
bioinformatics and integrative biology (assembly and annotation of novel plant genome sequences, evolutionary genomics, the analysis and integration of -omics data, gene network modelling and comparative genomics);

translation from models to crops and from lab to field (closing the lab-to-field learning cycle, wheat on phosphoproteomics, single cell analysis, multiplex mRNA in situ hybridisation, genome editing and network biology, soybean to add to the traditional pipeline));

breakthrough technologies (genome editing, efficient transformation pipelines to improve plant growth, yield, and climate resilience).

The marine research is mainly conducted in the Bioinformatics and Systems Biology group which focuses on functional, structural and comparative genomics. The marine topics concern the genetic study of algae (e.g. diatoms) for which collaboration is established with the laboratory of Protistology and Aquatic Ecology (UGent). Furthermore, the research also targets species which are important for aquaculture such as Artemia, in close collaboration with the laboratory of Aquaculture and Artemia Reference Center (UGent). The Plant Genome Editing group and the Phycology Research Group (UGent) collaborate and develop techniques to generate gain- and loss-of-function mutants for the green seaweed Ulva.

Publications (117)

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( 103 peer reviewed )

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Kamakura, S.; Bilcke, G.; Sato, S. (2024). Transcriptional responses to salinity-induced changes in cell wall morphology of the euryhaline diatom Pleurosira laevis. J. Phycol. 60(2): 308-326. https://dx.doi.org/10.1111/jpy.13437, more
Ma, X.; Vanneste, S.; Chang, J.; Ambrosino, L.; Barry, K.; Bayer, T.; Bobrov, A.A.; Boston, L.; Campbell, J.E.; Chen, H.; Chiusano, M.L.; Dattolo, E.; Grimwood, J.; He, G.F.; Jenkins, J.; Khachaturyan, M.; Marin-Guirao, L.; Mesterhazy, A.; Muhd, D.D.; Pazzaglia, J.; Plott, C.; Rajasekar, S.; Rombauts, S.; Ruocco, M.; Scott, A.; Tan, M.P.; Van de Velde, J.; Vanholme, B.; Webber, J.; Wong, L.L.; Yan, M.; Sung, Y.Y.; Novikova, P.; Schmutz, J.; Reusch, T.B.H.; Procaccini, G.; Olsen, J.L.; Van de Peer, Y. (2024). Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature Plants 10(2): 240-255. https://dx.doi.org/10.1038/s41477-023-01608-5, more
Mortelmans, J.; Semmouri, I.; Perneel, M.; Lagaisse, R.; Amadei Martínez, L.; Rommelaere, Z.; Hablützel, P.; Deneudt, K. (2024). Temperature-induced copepod depletion and the associated wax of Bellerochea in Belgian coastal waters: Implications and shifts in plankton dynamics. J. Sea Res. 201: 102523. https://dx.doi.org/10.1016/j.seares.2024.102523, more
Park, J.; Lee, H.; Asselman, J.; Janssen, C.; Depuydt, S.; De Saeger, J.; Friedl, T.; Sabbe, K.; Vyverman, W.; Philippart, C.J.M.; Pitarch, J.; Heynderickx, P.M.; Wu, D.; Ronsse, F.; De Neve, W.; Pandey, L.K.; Park, J.T.; Han, T. (2024). Harnessing the power of tidal flat diatoms to combat climate change. Crit. rev. environ. sci. technol. Latest Articles: 22. https://dx.doi.org/10.1080/10643389.2024.2315004, more
Perneel, M.; Lagaisse, R.; Mortelmans, J.; Maere, S.; Hablützel, P. (2024). Seasonal metabolic dynamics of microeukaryotic plankton: A year-long metatranscriptomic study in a temperate sea. mBio Online first: 1-17. https://dx.doi.org/10.1128/mbio.00383-24, more
Steinhagen, S.; Wichard, T.; Blomme, J. (2024). Phylogeny and ecology of the green seaweed Ulva. Bot. Mar. 67(2): 89-92. https://dx.doi.org/10.1515/bot-2024-0005, more
Verwee, E.; van de Walle, D.; De Bruyne, M.; Mienis, E.; Sekulic, M.; Chaerle, P.; Vyverman, W.; Foubert, I.; Dewettinck, K. (2024). Visualisation of microalgal lipid bodies through electron microscopy. J. Microsc. 293(2): 118-131. https://dx.doi.org/10.1111/jmi.13259, more
Garvetto, A.; Murua, P.; Kirchmair, M.; Salvenmoser, W.; Hittorf, M.; Ciaghi, S.; Harikrishnan, S.L.; Gachon, C.M.M.; Burns, J.A.; Neuhauser, S. (2023). Phagocytosis underpins the biotrophic lifestyle of intracellular parasites in the class Phytomyxea (Rhizaria). New Phytol. 238(5): 2130-2143. https://dx.doi.org/10.1111/nph.18828, more
Yu, L.; Khachaturyan, M.; Matschiner, M.; Healey, A.; Bauer, D.; Cameron, B.; Cusson, M.; Emmett Duffy, J.; Joel Fodrie, F.; Gill, D.; Grimwood, J.; Hori, M.; Hovel, K.; Hughes, A.R.; Jahnke, M.; Jenkins, J.; Keymanesh, K.; Kruschel, C.; Mamidi, S.; Menning, D.M.; Moksnes, P.-O.; Nakaoka, M.; Pennacchio, C.; Reiss, K.; Rossi, F.; Ruesink, J.L.; Schultz, S.T.; Talbot, S.; Unsworth, R.; Ward, D.H.; Dagan, T.; Schmutz, J.; Eisen, J.A.; Stachowicz, J.J.; Van de Peer, Y.; Olsen, J.L.; Reusch, T.B.H. (2023). Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nature Plants 9(8): 1207-1220. https://dx.doi.org/10.1038/s41477-023-01464-3, more
Zackova Suchanova, J.; Bilcke, G.; Romanowska, B.; Fatlawi, A.; Pippel, M.; Skeffington, A.; Schroeder, M.; Vyverman, W.; Vandepoele, K.; Kröger, N.; Poulsen, N. (2023). Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation. New Phytol. 240(2): 770-783. https://dx.doi.org/10.1111/nph.19145, more
Bogaert, K.A.; Blomme, J.; Beeckman, T.; De Clerck, O. (2022). Auxin's origin: do PILS hold the key? Trends Plant Sci. 27(3): 227-236. https://dx.doi.org/10.1016/j.tplants.2021.09.008, more
Gonçalves, M.F.M.; Hilário, S.; Van de Peer, Y.; Esteves, A.C.; Alves, A. (2022). Genomic and metabolomic analyses of the marine fungus Emericellopsis cladophorae: insights into saltwater adaptability mechanisms and its biosynthetic potential. Journal of Fungi 8(1): 31. https://dx.doi.org/10.3390/jof8010031, more
Liu, X.; Blomme, J.; Bogaert, K.A.; D'Hondt, S.; Wichard, T.; Deforce, D.; Van Nieuwerburgh, F.; De Clerck, O. (2022). Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction. BMC Plant Biol. 22(1): 19. https://dx.doi.org/10.1186/s12870-021-03361-3, more
Soiland-Reyes, S.; Sefton, P.; Crosas, M.; Castro, L.J.; Coppens, F.; Fernández, J.M.; Garijo, D.; Grüning, B.; La Rosa, M.; Leo, S.; Ó Carragáin, E.; Portier, M.; Trisovic, A.; RO-Crate Community; Groth, P.; Goble, C. (2022). Packaging research artefacts with RO-Crate. Data Science 5(2): 97-138. https://dx.doi.org/10.3233/ds-210053, more
Benites, L.F.; Bucchini, F.; Sanchez-Brosseau, S.; Grimsley, N.; Vandepoele, K.; Piganeau, G. (2021). Evolutionary genomics of sex-related chromosomes at the base of the green lineage. Genome Biology and Evolution 13(10): evab216. https://dx.doi.org/10.1093/gbe/evab216, more
Bilcke, G.; Van Craenenbroeck, L.; Castagna, A.; Osuna-Cruz, C.M.; Vandepoele, K.; Sabbe, K.; De Veylder, L.; Vyverman, W. (2021). Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta. NPG Scientific Reports 11(1): 17560. https://dx.doi.org/10.1038/s41598-021-92838-0, more
Bilcke, G.; Osuna-Cruz, C.M.; Silva, M.S.; Poulsen, N.; D'hondt, S.; Bulankova, P.; Vyverman, W.; De Veylder, L.; Vandepoele, K. (2021). Diurnal transcript profiling of the diatom Seminavis robusta reveals adaptations to a benthic lifestyle. Plant J. 107(1): 315-336. https://dx.doi.org/10.1111/tpj.15291, more
Bilcke, G.; Van den Berge, K.; Bonneure, E.; Poulsen, N.; Bulankova, P.; Osuna-Cruz, C.M.; Dickenson, J.; Sabbe, K.; Pohnert, G.; Vandepoele, K.; Mangelinckx, S.; Clement, L.; De Veylder, L.; Vyverman, W. (2021). Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta. ISME J. 15(2): 562-576. https://dx.doi.org/10.1038/s41396-020-00797-7, more
Blomme, J.; Liu, X.; Jacobs, T.B.; De Clerck, O. (2021). A molecular toolkit for the green seaweed Ulva mutabilis. Plant Physiol. 186(3): 1442-1454. https://dx.doi.org/10.1093/plphys/kiab185, more
Bogaert, K.; Blomme, J.; Blommaert, L.; Ljung, K.; Beeckman, T.; De Clerck, O. (2021). Auxin function in the brown alga Dictyota dichotoma: a case for a deep origin of auxin transport? Phycologia 60(sup1): 6-6, more
Bulankova, P.; Sekulić, M.; Jallet, D.; Nef, C.; Van Oosterhout, C.; Delmont, T.O.; Vercauteren, I.; Osuna-Cruz, C.M.; Vancaester, E.; Mock, T.; Sabbe, K.; Daboussi, F.; Bowler, C.; Vyverman, W.; Vandepoele, K.; De Veylder, L. (2021). Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms. Curr. Biol. 31(15): 3221-3232. https://dx.doi.org/10.1016/j.cub.2021.05.013, more
De Vos, S.; Rombauts, S.; Coussement, L.; Dermauw, W.; Vuylsteke, M.; Sorgeloos, P.; Clegg, J.S.; Nambu, Z.; Van Nieuwerburgh, F.; Norouzitallab, P.; Van Leeuwen, T.; De Meyer, T.; Van Stappen, G.; Van de Peer, Y.; Bossier, P. (2021). The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments. BMC Genom. 22(1): 635. https://dx.doi.org/10.1186/s12864-021-07937-z, more
Farhat, S.; Le, P.; Kayal, E.; Noel, B.; Bigeard, E.; Corre, E.; Maumus, F.; Florent, I.; Alberti, A.; Aury, J.-M.; Barbeyron, T.; Cai, R.; Da Silva, C.; Istace, B.; Labadie, K.; Marie, D.; Mercier, J.; Rukwavu, T.; Szymczak, J.; Tonon, T.; Alves-de-Souza, C.; Rouzé, P.; Van de Peer, Y.; Wincker, P.; Rombauts, S.; Porcel, B.M.; Guillou, L. (2021). Author correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp. BMC Biology 19(1): 209. https://dx.doi.org/10.1186/s12915-021-01144-8, more
Farhat, S.; Le, P.; Kayal, E.; Noel, B.; Bigeard, E.; Corre, E.; Maumus, F.; Florent, I.; Alberti, A.; Aury, J.-M.; Barbeyron, T.; Cai, R.; Da Silva, C.; Istace, B.; Labadie, K.; Marie, D.; Mercier, J.; Rukwavu, T.; Szymczak, J.; Tonon, T.; Alves-de-Souza, C.; Rouzé, P.; Van de Peer, Y.; Wincker, P.; Rombauts, S.; Porcel, B.M.; Guillou, L. (2021). Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp. BMC Biology 19(1): 1. https://hdl.handle.net/10.1186/s12915-020-00927-9, more
Gonçalves, M.F.M.; Hilário, S.; Tacão, M.; Van de Peer, Y.; Alves, A.; Esteves, A.C. (2021). Genome and metabolome MS-based mining of a marine strain of Aspergillus affinis. Journal of Fungi 7(12): 1091. https://dx.doi.org/10.3390/jof7121091, more
Labarre, A.; López-Escardó, D.; Latorre, F.; Leonard, G.; Bucchini, F.; Obiol, A.; Cruaud, C.; Sieracki, M.E.; Jaillon, O.; Wincker, P.; Vandepoele, K.; Logares, R.; Massana, R. (2021). Comparative genomics reveals new functional insights in uncultured MAST species. ISME J. 15: 1767-1781. https://hdl.handle.net/10.1038/s41396-020-00885-8, more
Liu, X.; Blomme, J.; Bogaert, K.; De Clerck, O. (2021). Gametogenesis in the green seaweed Ulva mutabilis coincides with massive transcriptional restructuring. Phycologia 60(sup1): 7-7, more
Massana, R.; Labarre, A.; López-Escardó, D.; Obiol, A.; Bucchini, F.; Hackl, T.; Fischer, M.G.; Vandepoele, K.; Tikhonenkov, D.V.; Husnik, F.; Keeling, P.J. (2021). Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate. ISME J. 15(1): 154-167. https://hdl.handle.net/10.1038/s41396-020-00770-4, more
Baudry, L.; Guiglielmoni, N.; Marie-Nelly, H.; Cormier, A.; Marbouty, M.; Avia, K.; Mie, Y.L.; Godfroy, O.; Sterck, L.; Cock, J.M.; Zimmer, C.; Coelho, S.M.; Koszul, R. (2020). instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder. Genome Biol. 21(1): 148. https://hdl.handle.net/10.1186/s13059-020-02041-z, more
Blommaert, L.; Vancaester, E.; Huysman, M.J.J.; Osuna-Cruz, C.M.; D'hondt, S.; Lavaud, J.; Lepetit, B.; Winge, P.; Bones, A.M.; Vandepoele, K.; Vyverman, W.; Sabbe, K. (2020). Light regulation of LHCX genes in the benthic diatom Seminavis robusta. Front. Mar. Sci. 7: 192. https://hdl.handle.net/10.3389/fmars.2020.00192, more
Bousquet, L.; Hemon, C.; Malburet, P.; Bucchini, F.; Vandepoele, K.; Grimsley, N.; Moreau, H.; Echeverria, M. (2020). The medium-size noncoding RNA transcriptome of Ostreococcus tauri, the smallest living eukaryote, reveals a large family of small nucleolar RNAs displaying multiple genomic expression strategies. NAR Genomics and Bioinformatics 2(4): lqaa080. https://dx.doi.org/10.1093/nargab/lqaa080, more
De Saeger, J.; Van Praet, S.; Vereecke, D.; Park, J.; Jacques, S.; Han, T.; Depuydt, S. (2020). Toward the molecular understanding of the action mechanism of Ascophyllum nodosum extracts on plants. J. Appl. Phycol. 32(1): 573-597. https://hdl.handle.net/10.1007/s10811-019-01903-9, more
Del Cortona, A.; Jackson, C.J.; Bucchini, F.; Van Bel, M.; D'hondt, S.; Skaloud, P.; Delwiche, C.F.; Knoll, A.H.; Raven, J.A.; Verbruggen, H.; Vandepoele, K.; De Clerck, O.; Leliaert, F. (2020). Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proc. Natl. Acad. Sci. U.S.A. 117(5): 2551-2559. https://dx.doi.org/10.1073/pnas.1910060117, more
Jueterbock, A.; Boström, C.; Coyer, J.A.; Olsen, J.L.; Kopp, M.; Dhanasiri, A.K.S.; Smolina, I.; Arnaud-Haond, S.; Van de Peer, Y.; Hoarau, G. (2020). The seagrass methylome is associated with variation in photosynthetic performance among clonal shoots. Front. Plant Sci. 11: 571646. https://hdl.handle.net/10.3389/fpls.2020.571646, more
Li, L.; Wang, S.; Wang, H.; Sahu, S.K.; Marin, B.; Li, H.; Xu, Y.; Liang, H.; Li, Z.; Cheng, S.; Reder, T.; Çebi, Z.; Wittek, S.; Petersen, M.; Melkonian, B.; Du, H.; Yang, H.; Wang, J.; Wong, G.K.-S.; Xu, X.; Liu, X.; Van de Peer, Y.; Melkonian, M.; Liu, H. (2020). Author correction: The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution 4(9): 1280-1280. https://dx.doi.org/10.1038/s41559-020-1268-5, more
Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng; Reder, Tanja; Çebi, Zehra; Wittek, Sebastian; Petersen, Morten; Melkonian, Barbara; Du, Hongli; Yang, Huanming; Wang, Jian; Wong, Gane Ka-Shu; Xu, Xun; Liu, Xin; Van de Peer, Yves; Melkonian, Michael; Liu, Huan (2020). The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution 4(9): 1220-1231. https://dx.doi.org/10.1038/s41559-020-1221-7, more
Osuna-Cruz, C.M.; Bilcke, G.; Vancaester, E.; De Decker, S.; Bones, A.M.; Winge, P.; Poulsen, N.; Bulankova, P.; Verhelst, B.; Audoor, S.; Belisova, D.; Pargana, A.; Russo, M.; Stock, F.; Cirri, E.; Brembu, T.; Pohnert, G.; Piganeau, G.; Ferrante, M.I.; Mock, T.; Sterck, L.; Sabbe, K.; De Veylder, L.; Vyverman, W.; Vandepoele, K. (2020). Author correction: The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. Nature Comm. 11: 5331. https://dx.doi.org/10.1038/s41467-020-19222-w, more
Osuna-Cruz, C.M.; Bilcke, G.; Vancaester, E.; De Decker, S.; Bones, A.M.; Winge, P.; Poulsen, N.; Bulankova, P.; Verhelst, B.; Audoor, S.; Belisova, D.; Pargana, A.; Russo, M.; Stock, F.; Cirri, E.; Brembu, T.; Pohnert, G.; Piganeau, G.; Ferrante, M.I.; Mock, T.; Sterck, L.; Sabbe, K.; De Veylder, L.; Vyverman, W.; Vandepoele, K. (2020). The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms. Nature Comm. 11(1): 3320. https://hdl.handle.net/10.1038/s41467-020-17191-8, more
Pereira-Santana, A.; Gamboa-Tuz, S.D.; Zhao, T.; Schranz, M.E.; Vinuesa, P.; Bayona, A.; Rodriguez-Zapata, L.C.; Castano, E. (2020). Fibrillarin evolution through the Tree of Life: comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin. PLoS computational biology 16(10): e1008318. https://hdl.handle.net/10.1371/journal.pcbi.1008318, more
Stock, F.; Bilcke, G.; De Decker, S.; Osuna-Cruz, C.M.; Van den Berge, K.; Vancaester, E.; De Veylder, L.; Vandepoele, K.; Mangelinckx, S.; Vyverman, W. (2020). Distinctive growth and transcriptional changes of the diatom Seminavis robusta in response to quorum sensing related compounds. Front. Microbiol. 11: 1240. https://dx.doi.org/10.3389/fmicb.2020.01240, more
Vancaester, E.; Depuydt, T.; Osuna-Cruz, C.M.; Vandepoele, K. (2020). Comprehensive and functional analysis of horizontal gene transfer events in diatoms. Mol. Biol. Evol. 37(11): 3243-3257. https://hdl.handle.net/10.1093/molbev/msaa182, more
Yau, S.; Krasovec, M.; Benites, L.F.; Rombauts, S.; Groussin, M.; Vancaester, E.; Aury, J.-M.; Derelle, E.; Desdevises, Y.; Escande, M.-L.; Grimsley, N.; Guy, J.; Moreau, H.; Sanchez-Brosseau, S.; Van de Peer, Y.; Vandepoele, K.; Gourbière, S.; Piganeau, G. (2020). Virus-host coexistence in phytoplankton through the genomic lens. Science Advances 6(14): eaay2587. https://hdl.handle.net/10.1126/sciadv.aay2587, more
Annunziata, R.; Ritter, A.; Fortunato, A.E.; Manzotti, A.; Cheminant-Navarro, S.; Agier, N.; Huysman, M.J.J.; Winge, P.; Bones, A.M.; Bouget, F.-Y.; Lagomarsino, M.C.; Bouly, J.-P.; Falciatore, A. (2019). bHLH-PAS protein RITMO1 regulates diel biological rhythms in the marine diatom Phaeodactylum tricornutum. Proc. Natl. Acad. Sci. U.S.A. 116(26): 13137-13142. https://dx.doi.org/10.1073/pnas.1819660116, more
Bogaert, K.A.; Blommaert, L.; Ljung, K.; Beeckman, T.; De Clerck, O. (2019). Auxin function in the brown alga Dictyota dichotoma. Plant Physiol. 179(1): 280-299. https://dx.doi.org/10.1104/pp.18.01041, more
Cirri, E.; De Decker, S.; Bilcke, G.; Werner, M.; Osuna-Cruz, C.M.; De Veylder, L.; Vandepoele, K.; Werz, O.; Vyverman, W.; Pohnert, G. (2019). Associated bacteria affect sexual reproduction by altering gene expression and metabolic processes in a biofilm inhabiting diatom. Front. Microbiol. 10: 1790. https://dx.doi.org/10.3389/fmicb.2019.01790, more
Patil, S.; Moeys, S.; von Dassow, P.; Huysman, M.J.J.; Mapleson, D.; De Veylder, L.; Sanges, R.; Vyverman, W.; Montresor, M.; Ferrante, M.I. (2019). Correction to: identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudonitzschia multistriata and Seminavis robusta. BMC Genom. 20: 544. https://dx.doi.org/10.1186/s12864-019-5942-4, more
Tan, M.P.; Wong, L.L.; Razali, S.A.; Afiqah-Aleng, N.; Nor, S.A.M.; Sung, Y.Y.; Van de Peer, Y.; Sorgeloos, P.; Danish-Daniel, M. (2019). Applications of next-generation sequencing technologies and computational tools in molecular evolution and aquatic animals conservation studies: a short review. Evolutionary Bioinformatics 15: 1-5. https://dx.doi.org/10.1177/1176934319892284, more
De Clerck, O.; Kao, S.-M.; Bogaert, K.A.; Blomme, J.; Foflonker, F.; Kwantes, M.; Vancaester, E.; Vanderstraeten, L.; Aydogdu, E.; Boesger, J.; Califano, G.; Charrier, B.; Clewes, R.; Del Cortona, A.; D’Hondt, S.; Fernandez-Pozo, N.; Gachon, C.M.; Hanikenne, M.; Lattermann, L.; Leliaert, F.; Liu, X.; Maggs, C.A.; Popper, Z.A.; Raven, J.A.; Van Bel, M.; Wilhelmsson, P.K.I.; Bhattacharya, D.; Coates, J.C.; Rensing, S.A.; Van Der Straeten, D.; Vardi, A.; Sterck, L.; Vandepoele, K.; Van de Peer, Y.; Wichard, T.; Bothwell, J.H. (2018). Insights into the evolution of multicellularity from the sea lettuce genome. Curr. Biol. 28(18): 2921-2933.e5. https://dx.doi.org/10.1016/j.cub.2018.08.015, more
Phoma, S.; Vikram, S.; Jansson, J.K.; Ansorge, I.J.; Cowan, D.A.; Van de Peer, Y.; Makhalanyane, T.P. (2018). Agulhas Current properties shape microbial community diversity and potential functionality. NPG Scientific Reports 8: 10542. https://dx.doi.org/10.1038/s41598-018-28939-0, more
Blommaert, L.; Huysman, M.J.J.; Vyverman, W.; Lavaud, J.; Sabbe, K. (2017). Contrasting NPQ dynamics and xanthophyll cycling in a motile and a non-motile intertidal benthic diatom. Limnol. Oceanogr. 62(4): 1466-1479. https://dx.doi.org/10.1002/lno.10511, more
Bogaert, K.A.; Beeckman, T.; De Clerck, O. (2017). Egg activation-triggered shape change in the Dictyota dichotoma (Phaeophyceae) zygote is actin-myosin and secretion dependent. Ann. Bot. 120(4): 529-538. https://dx.doi.org/10.1093/aob/mcx085, more
Cormier, A.; Avia, K.; Sterck, L.; Derrien, T.; Wucher, V.; Andres, G.; Monsoor, M.; Godfroy, O.; Lipinska, A.; Perrineau, M.-M.; Van de Peer, Y.; Hitte, C.; Corre, E.; Coelho, S.M.; Cock, J.M. (2017). Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus. New Phytol. 214(1): 219-232. https://dx.doi.org/10.1111/nph.14321, more
De Clerck, O.; Kao, S.-M.; Sterck, L.; Wichard, T.; Bothwell, J.H. (2017). The annotation of sea lettuce Ulva genome: a green algal blooming species. Phycologia 56(Supplement 4): 40-41, more
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Sekulic, M.; Cleyman, A.; Bulankova, P.; De Veylder, L.; Vyverman, W. (2024). Development of a forward genetic screen based on mitotic recombination in diatoms, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication, 91: pp. 115, more
Soiland-Reyes, S.; Sefton, P.; Castro, L.J.; Coppens, F.; Garijo, D.; Leo, S.; Portier, M.; Groth, P. (2022). Creating lightweight FAIR Digital Objects with RO-Crate. Research Ideas and Outcomes 8: e93937. https://dx.doi.org/10.3897/rio.8.e93937, more
Blommaert, L.; Huysman, M.; Barnett, A.B.; Vyverman, W.; Lavaud, J.L.; Sabbe, K. (2016). Photoprotection capacity differs between functional groups of intertidal benthic diatoms: regulation & performance, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 12 February 2016. VLIZ Special Publication, 75: pp. 18, more
Bulankova, P.; Moeys, S.; Bouillon, B.; Huysman, M.J.J.; Verhelst, B.; Vancaester, E.; Vandepoele, K.; Sabbe, K.; Vyverman, W.; De Veylder, L. (2016). Uncovering the sex determining locus in diatom Seminavis robusta, in: Pienitz, R. et al. (Ed.) IDS 2016: 24th International Diatom Symposium, Quebec, Canada, 21-26 August 2016: Program & Abstracts. pp. 158, more
Del Cortona, A.; Leliaert, F.; Vandepoele, K.; De Clerck, O. (2015). Comparative transcriptomics and green seaweeds: a novel approach to unravel the remarkable morphology of Ulvophyceae, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 20 February 2015. VLIZ Special Publication, 71: pp. 54, more
Matthijs, M. (2014). A first look at the genetic control mechanisms shaping metabolic changes during nitrogen starvation in Phaeodactylum tricornutum. PhD Thesis. Ghent University, Faculty of Sciences, Department of Plant Biotechnology and Bioinformatics/VIB, Department of Plant Systems Biology: Gent. 135 + appx. pp., more
Matthijs, M.; Fabris, M.; Obata, T.; Broos, S.; Baart, G.J.E.; Fernie, A.R.; Vyverman, W.; Goossens, A. (2014). The early nitrogen starvation response of the diatom Phaeodactylum tricornutum, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 7 March 2014. VLIZ Special Publication, 67, more
Matthijs, M.; Fabris, M.; Baart, G.J.E.; Goossens, A.; Vyverman, W. (2013). Differential expression of a model diatom in the early phases of lipid accumulation, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Marine Scientists' Day. Brugge, Belgium, 15 February 2013. VLIZ Special Publication, 63: pp. 66, more
Fabris, M.; Matthijs, M.; Carbonelle, S.; Vyverman, W.; Goossens, A.; Baart, G.J.E. (2012). Sterol biosynthesis in P. tricornutum, in: Sabbe, K. et al. (Ed.) Twenty-second International Diatom Symposium, Aula Academica, Ghent, 26-31 August 2012. Abstracts. VLIZ Special Publication, 58: pp. 41, more
Huysman, M.J.J.; Fortunato, A.E.; Matthijs, M.; Van den Daele, H.; Inzé, D.; Bowler, C.; Kroth, P.G.; Falciatore, A.; Vyverman, W. (2012). Control of light-dependent cell cycle onset by the diatom-specific cyclin dsCYC2, in: Sabbe, K. et al. (Ed.) Twenty-second International Diatom Symposium, Aula Academica, Ghent, 26-31 August 2012. Abstracts. VLIZ Special Publication, 58: pp. 52, more
Huysman, M.J.J.; Fortunato, A.E.; Matthijs, M.; Van den Daele, H.; Inzé, D.; Bowler, C.; Falciatore, A.; De Veylder, L.; Vyverman, W. (2012). Unravelling the light-dependent cell cycle onset in diatoms, in: Mees, J. et al. (Ed.) Book of abstracts - VLIZ Young Marine Scientists' Day. Brugge, Belgium, 24 February 2012. VLIZ Special Publication, 55: pp. 41, more

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PROMICROBE: Microbes as positive actors for more sustainable aquaculture, more SUNLIGHT: Lipid-based, high value products and renewable energy from microalgae, more

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