| | Expertise |
Thesaurusterm: Mariene ecologie
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| Projecten (8) |
Top | Publicaties | Projecten | Datasets |
- Genetic Tools for Ecosystem Health Assessment in the North Sea Region, meer
- Genomic Observatories under European Projects EMO BON and ARMS-MBON, meer
- Imaging data and services for aquatic science, meer
- Integration of biodiversity monitoring data into the Digital Twin Ocean, meer
- MARine COastal BiOdiversity Long-term Observations, meer
- Operational sensing life technologies for marine ecosystems, meer
- Post-brexit coastal pelagic fisheries, meer
- Van lucht- tot zeebodemobservatie: Uitmuntendheid bereiken in oceaanobservatie en -conservatie met behulp van deep learning, meer
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| Datasets (16) |
Top | Publicaties | Projecten | Datasets |
| Data products [show] |
- Decrop, W., & Lagaisse, R. (2025). Pre-trained Phytoplankton species classifier Model. Zenodo., meer
- Decrop, W., Lagaisse, R., Mortelmans, J., Muyle, J., Amadei Martínez, L., & Deneudt, K. (2025). LifeWatch observatory data: phytoplankton annotated trainingset by FlowCam imaging in the Belgian Part of the North Sea [Data set]. Zenodo., meer
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| Data [show] |
- Decrop, W., Lagaisse, R., Jonas, M., Muyle, J., Amadei Martínez, L., & Deneudt, K. (2024). LifeWatch observatory data: phytoplankton annotated trainingset by FlowCam imaging in the Belgian Part of the North Sea (Versie v1). Zenodo., meer
- Flanders Marine Institute (VLIZ), Belgium (2026): LifeWatch observatory data: phytoplankton observations by FlowCam imaging in the Belgian Part of the North Sea., meer
- Lagaisse, R.; Flanders Marine Institute: Belgium; (2020): Phytoplankton biodiversity in the Belgian part of the North Sea: a microscopic and molecular inventory, meer
- Lagaisse, Rune, R.; Amadei Martinez, Luz, L.; Decrop, Wout, W.; Deneudt, Klaas, K.; Muyle, Julie, J.; Mortelmans, Jonas, J.; Flanders Marine Institute (VLIZ): Belgium; (2024): LifeWatch observatory data: phytoplankton annotated image library by FlowCam imaging for the Belgian part of the North Sea. Marine Data Archive., meer
- Mortelmans, J.; Lagaisse, R.; Rombouts, I., Artigas, F.; Hubert, Z.; Gallot, C.; Flanders Marine Institute: Belgium; Centre national de la recherce scientifique: France; (2020): Plankton biodiversity data from a LifeWatch/Jerico North Sea Cruise with R/V Simon Stevin in May 2022, meer
- HBS GEANS: Obst M., Stæhr P., Sundberg P., Reiss H., Daraghmeh N., Axberg A., Deneudt K., Hablutzel P., Mortelmans J., Delacauw S., Lagaisse R. (2019) Hard Bottom Substrate pilot GEANS, meer
- Pagnier J.; Allcock L.; Cancio I.; Chatzinikolaou E.; Chatzigeorgiou G.; Chrismas NAM.; Costantini F.; Dailianis T.; Deneudt K.; Diaz de Cerio, O.; Digenis M.; Exter K.; GerovasileiouV.; , González Fernández J.; Kauppi L.; Keklikoglou K.; Kristoffersen JB.; Lagaisse R.; Mavrič B.; Mortelmans J.; Paredes E.; Pavloudi C.; Piazza A.; Power AM.; Ramšak A.; Santi I.; Solbakken J.; Stavroulaki M.; Stæhr PAU.; Tajadura J.; Souza Troncoso J.; Vasileiadou K.; Vernadou E.; Obst M. (2025): ARMS-MBON data on long-term monitoring of hard-bottom communities: 18S results from 2020-2022, meer
- Pagnier J.; Allcock L.; Cancio I.; Chatzinikolaou E.; Chatzigeorgiou G.; Chrismas NAM.; Costantini F.; Dailianis T.; Deneudt K.; Diaz de Cerio, O.; Digenis M.; Exter K.; GerovasileiouV.; , González Fernández J.; Kauppi L.; Keklikoglou K.; Kristoffersen JB.; Lagaisse R.; Mavrič B.; Mortelmans J.; Paredes E.; Pavloudi C.; Piazza A.; Power AM.; Ramšak A.; Santi I.; Solbakken J.; Stavroulaki M.; Stæhr PAU.; Tajadura J.; Souza Troncoso J.; Vasileiadou K.; Vernadou E.; Obst M. (2025): ARMS-MBON data on long-term monitoring of hard-bottom communities: COI results from 2020-2022, meer
- Pagnier J.; Allcock L.; Cancio I.; Chatzinikolaou E.; Chatzigeorgiou G.; Chrismas NAM.; Costantini F.; Dailianis T.; Deneudt K.; Diaz de Cerio, O.; Digenis M.; Exter K.; GerovasileiouV.; , González Fernández J.; Kauppi L.; Keklikoglou K.; Kristoffersen JB.; Lagaisse R.; Mavrič B.; Mortelmans J.; Paredes E.; Pavloudi C.; Piazza A.; Power AM.; Ramšak A.; Santi I.; Solbakken J.; Stavroulaki M.; Stæhr PAU.; Tajadura J.; Souza Troncoso J.; Vasileiadou K.; Vernadou E.; Obst M. (2025): ARMS-MBON data on long-term monitoring of hard-bottom communities: ITS results from 2020-2022, meer
- EMO BON: European Marine Omics Biodiversity Observation Network 2021 genomic observations (18S v4, COI, ITS1F, ITS2) in the Belgian Part of the North Sea, meer
- EMO BON: European Marine Omics Biodiversity Observation Network 2022 genomic observations (18S v4, COI, ITS1F, ITS2) in the Belgian Part of the North Sea, meer
- EMO BON: European Marine Omics Biodiversity Observation Network 2023 genomic observations (18S v4, COI, ITS1F, ITS2) in the Belgian Part of the North Sea, meer
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| Other [show] |
- EMBRC-BE Joint Development Activity: Optimisation of in-situ sampling from ARMS in dynamic coastal environments, meer
- EMO BON: European Marine Omics Biodiversity Observation Network 2024 genomic observations (18S v4, COI, ITS1F, ITS2) in the Belgian Part of the North Sea, meer
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| Publicaties (18) |
Top | Publicaties | Projecten | Datasets |
| A1 publicaties (10) [show] |
 Santi, Ioulia; Pavloudi, Christina; Abagnale, Maria; Azua, Iñigo; Baña, Zuriñe; Bastianini, Mauro; Belser, Caroline; Berg, Kristel; Bilbao, Jone; Bird, Kimberley; Broudin, Caroline; Camusat, Mathieu; Cancio, Ibon; Caray-Counil, Louis; Casotti, Raffaella; Castel, Jade; Comtet, Thierry; Cox, Cymon; Cunliffe, Michael; Daguin, Claire; Deneudt, Klaas; Díaz de Cerio, Oihane; Exter, Katrina; Fauvelot, Cécile; Fontana, Yann; Frada, Miquel; Galand, Pierre; Gallia, Roberto; Garczarek, Laurence; González Fernández, Jose; Guillou, Laure; Heynderickx, Hanneloor; Koplovitz, Gil; Labrune, Celine; Lagaisse, Rune; Laroquette, Arnaud; Lescure, Lyvia; Lopes, Eva; Loulakaki, Melina; Louro, Bruno; Magalhães, Catarina; Margiotta, Francesca; Moal, Hannah; Moussy, Alice; Not, Fabrice; Percopo, Isabella; Paredes Rosendo, Estefanía; Péru, Erwan; Poulain, Julie; Praebel, Kim; Rigaut-Jalabert, Fabienne; Romac, Sarah; Rzeznik-Orignac, Jadwiga; Sarno, Diana; Souza Troncoso, Jesús; Thiébaut, Eric; Thomas, Wilfried; Tkacz, Andrzej; Tramontano, Ferdinando; Trano, Anna Chiara; Wincker, Patrick; Pade, Nicolas (2026). Next release of the European Marine Omics Biodiversity Observation Network (EMO BON) shotgun metagenomic data from water and sediment samples (Release 2). Biodiversity Data Journal 14: e178484. https://dx.doi.org/10.3897/bdj.14.e178484, meer- Azmi, E.; Alibabaei, K.; Kozlov, V.; Krijger, T.; Accarino, G.; Ayata, S.-D.; Calatrava, A.; De Carlo, M.M.; Decrop, W.; Elia, D.; Fiore, L.; Francescangeli, M.; Irisson, J.-O.; Lagaisse, R.; Laviale, M.; Lebeaud, A.; Leluschko, C.; Martínez, E.; Moltó, G.; Atake, I.R.; Antonio Augusto, S.N.; Damian, S.; Jesus, S.-G.; Tayyab, M.A.; Tosello, V.; López García, A.; Schaap, D.; Sipos, G. (2025). Best practices for AI-based image analysis applications in aquatic sciences: The iMagine case study. Ecological Informatics 91: 103306. https://dx.doi.org/10.1016/j.ecoinf.2025.103306, meer
- Decrop, W.; Lagaisse, R.; Mortelmans, J.; Muñiz, C.; Heredia, I.; Calatrava, A.; Deneudt, K. (2025). Automated image classification workflow for phytoplankton monitoring. Front. Mar. Sci. 12: 1699781. https://dx.doi.org/10.3389/fmars.2025.1699781, meer
- Lagaisse, R.; Dillen, N.; Bakeev, D.; Decrop, W.; Focke, P.; Mortelmans, J.; Muyle, J.; Deneudt, K. (2025). Advancing long-term phytoplankton biodiversity assessment in the North Sea using an imaging approach. Scientific Data 12: 1989. https://dx.doi.org/10.1038/s41597-025-06278-w, meer
- Pagnier, Justine; Allcock, Louise; Cancio, Ibon; Chatzinikolaou, Eva; Chatzigeorgiou, Giorgos; Chrismas, Nathan; Costantini, Federica; Dailianis, Thanos; Deneudt, Klaas; Díaz de Cerio, Oihane; Digenis, Markos; Exter, Katrina; Gerovasileiou, Vasilis; González Fernández, Jose; Kauppi, Laura; Keklikoglou, Kleoniki; Kristoffersen, Jon Bent; Lagaisse, Rune; Mavrič, Borut; Mortelmans, Jonas; Paredes, Estefania; Pavloudi, Christina; Piazza, Alessandro; Power, Anne Marie; Ramšak, Andreja; Santi, Ioulia; Solbakken, Jostein; Stavroulaki, Melanthia; Stæhr, Peter; Tajadura, Javier; Souza Troncoso, Jesus; Vasileiadou, Katerina; Vernadou, Emmanouela; Obst, Matthias (2025). A long-term ecological research dataset from the marine genetic monitoring programme ARMS-MBON 2020-2021. Biodiversity Data Journal 13: e148981. https://dx.doi.org/10.3897/bdj.13.e148981, meer
- Pavloudi, C.; Santi, I.; Azua, I.; Baña, Z.; Bastianini, M.; Belser, C.; Bilbao, J.; Bitz-Thorsen, J.; Broudin, C.; Camusat, M.; Cancio, I.; Caray-Counil, L.; Casotti, R.; Castel, J.; Comtet, T.; Cox, C.J.; Daguin, C.; Díaz, O.; Diaz de Cerio, O.; Exter, K.; Fauvelot, C.; Frada, M.J.; Galand, P.E.; Garczarek, L.; González Fernández, J.; Guillou, L.; Hablützel, P.I.; Heynderickx, H.; Houbin, C.; Kervella, A.E.; Krystallas, A.; Lagaisse, R.; Laroquette, A.; Lescure, L.; Lopes, E.; Loulakaki, M.; Louro, B.; Magalhães, C.; Maidanou, M.; Margiotta, F.; Montresor, M.; Not, F.; Paredes, E.; Percopo, I.; Péru, E.; Poulain, J.; Praebel, K.; Rigaut-Jalabert, F.; Romac, S.; Stavroulaki, M.; Troncoso, J.S.; Thiebaut, E.; Thomas, W.; Tkacz, A.; Trano, A.C.; Wincker, P.; Pade, N. (2025). First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples. Biodiversity Data Journal 13: e143585. https://dx.doi.org/10.3897/BDJ.13.e143585, meer
- Mortelmans, J.; Semmouri, I.; Perneel, M.; Lagaisse, R.; Amadei Martínez, L.; Rommelaere, Z.; Hablützel, P.; Deneudt, K. (2024). Temperature-induced copepod depletion and the associated wax of Bellerochea in Belgian coastal waters: Implications and shifts in plankton dynamics. J. Sea Res. 201: 102523. https://dx.doi.org/10.1016/j.seares.2024.102523, meer
- Perneel, M.; Lagaisse, R.; Mortelmans, J.; Maere, S.; Hablützel, P. (2024). Seasonal metabolic dynamics of microeukaryotic plankton: A year-long metatranscriptomic study in a temperate sea. mBio Online first(8): 1-17. https://dx.doi.org/10.1128/mbio.00383-24, meer
- Santi, Ioulia; Beluche, Odette; Beraud, Mélanie; Buttigieg, Pier Luigi; Casotti, Raffaella; Cox, Cymon J.; Cunliffe, Michael; Davies, Neil; de Cerio, Oihane Diaz; Exter, Katrina; Kervella, Anne Emmanuelle; Kotoulas, Georgios; Lagaisse, Rune; Laroquette, Arnaud; Louro, Bruno; Not, Fabrice; Obst, Matthias; Pavloudi, Christina; Poulain, Julie; Præbel, Kim; Vanaverbeke, Jan; Pade, Nicolas (2023). European marine omics biodiversity observation network: A strategic outline for the implementation of omics approaches in ocean observation. Front. Mar. Sci. 10(1118120): 1-13. https://dx.doi.org/10.3389/fmars.2023.1118120, meer
- Hablützel, P.I.; Rombouts, I.; Dillen, N.; Lagaisse, R.; Mortelmans, J.; Ollevier, A.; Perneel, M.; Deneudt, K. (2021). Exploring new technologies for plankton observations and monitoring of ocean health, in: Kappel, E.S. et al. Frontiers in ocean observing: Documenting ecosystems, understanding environmental changes, forecasting hazards. Oceanography, Suppl. 34(4): pp. 20-25. https://dx.doi.org/10.5670/oceanog.2021.supplement.02-09, meer
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| Boek [show] | |
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| Boekhoofdstukken (2) [show] |
- De Cauwer, K.; Courtens, W.; De Witte, B.; De Schrijver, C.; Degraer, S.; Deneudt, K.; Desmidt, J.; Desmit, X.; Devos, K.; Everaert, G.; Francken, F.; Haelters, J.; Hostens, K.; Kapasakali, D.; Kerckhof, F.; Kerkhove, T.; Kint, L.; Knockaert, M.; Lagaisse, R.; Legrand, S.; Maes, J.; Montereale Gavazzi, G.; Moreau, K.; Norro, A.; Ochetti, F.E.; Parmentier, K.; Podholova, P.; Ponsar, S.; Rombouts, I.; Rumes, B.; Schallier, R.; Stienen, E.; Terseleer, N.; Vanavermaete, D.; Vanermen, N.; Van de walle, M.; Van der Zande, D.; Vanhalst, K.; Van Hoey, G.; Van Lancker, V.; Van Nieuwenhove, A.; Verlé, K.; Verstraete, H. (2025). Samenvatting van de staat van het marien milieu, in: Belgische Staat Mariene Strategie Deel 1 voor de Belgische mariene wateren. Staat van Belgische mariene wateren, goede milieutoestand en milieudoelen. Kaderrichtlijn Mariene Strategie - Artikel 8, 9 en 10. pp. 11-60, meer
- Decrop, W.; Lagaisse, R.; Mortelmans, J.; Muñiz, C.; Deneudt, K. (2025). Design and implementation of an automated Image classification workflow for phytoplankton monitoring, in: Praet, N. et al. Particles in Europe 2025: Conference program and proceedings, 17 - 19 September 2025, Ostend, Belgium. pp. 62-70, meer
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| Thesis [show] |
- Lagaisse, R. (2020). Phytoplankton biodiversity in the Belgian part of the North Sea: a microscopic and molecular inventory. MSc Thesis. Ghent University, Biology Department: Gent. 117 pp., meer
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| Abstracts (4) [show] |
- Dujardin, J.; Perneel, M.; Lagaisse, R.; Larrinoa, N.; Mortelmans, J.; Theetaert, H.; Verbrugge, S.; Gkritzalis, T.; De Rijcke, M.; Maere, S.; Hablützel, P.I. (2024). From bloom to foam: Tracing the role of Phaeocystis in marine gel formation, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication, 91: pp. 18-19, meer
- Lagaisse, R.; Decrop, W.; Deneudt, K. (2024). AI in marine sciences: an open-access integrated environment for automated classification of phytoplankton images, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication, 91: pp. 82, meer
- Ollevier, A.; Ponsoni, L.; Develter, R.; Mortelmans, J.; Lagaisse, R.; De Troch, M.; Hablützel, P.; Boone, W. (2023). Oceanic drivers, nutrient dynamics and plankton communities in West-Greenland’s fjord system: A multidisciplinary study, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 1 March 2023, Bruges. VLIZ Special Publication, 90: pp. 79, meer
- Lagaisse, R.; Dillen, N.; Deneudt, K.; Hablützel, P. (2022). Working in a new era of automated classification in micro- (phyto)plankton monitoring: a FlowCAM case study, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 58, meer
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